Lab Automation Engineer

Job Title: Lab Automation Software Engineer – Clinical Laboratory Job Summary: We are seeking a highly skilled and detail-orientedLab Automation Software Engineerto support the development, integration, and optimization of software-driven automation systems within ourhigh-complexity clinical laboratory. This role will play a critical part in scaling operations, improving throughput, and ensuring the reliability and compliance of automated testing platforms. The ideal candidate will have a strong background insoftware development,instrument integration, andworkflow automation, along with a solid understanding ofclinical lab processes and regulatory requirements(CLIA, CAP, FDA). This is a cross-functional role that will work closely with the automation, informatics, lab operations, and quality teams. Key Responsibilities: Software Development & Integration • Design, develop, and maintain custom software tools to automate laboratory workflows, instrument control, and data capture. • Integrate laboratory instruments (e.g., liquid handlers, PCR machines, mass spectrometers, robotic arms) with Laboratory Information Management Systems (LIMS). • Develop and deploy instrument drivers, APIs, and middleware to facilitate seamless data exchange between lab devices and backend systems. Automation & Workflow Optimization • Collaborate with lab scientists and engineers to automate sample processing steps, data transfer, and error handling. • Translate wet lab SOPs into executable scripts or workflows using tools like Python, Java, or LabVIEW. • Optimize existing automation protocols to reduce human error, improve efficiency, and enhance traceability. Data Handling & Reporting • Develop interfaces and pipelines for secure, real-time data collection and transfer to LIMS or EHR systems. • Implement automated QC checks and reporting logic for test result validation. • Support data logging, version control, and audit trail generation for compliance. Validation & Compliance • Support validation of automation workflows in accordance with CLIA, CAP, and FDA standards. • Write and maintain technical documentation, including user manuals, software specifications, risk assessments, and validation protocols. • Work closely with QA and Regulatory Affairs to ensure all systems are validated and compliant. Required Qualifications: • Bachelor’s or Master’s degree in Computer Science, Bioinformatics, Electrical Engineering, Biomedical Engineering, or related field. • 3+ years of experience in lab automation software engineering, preferably in aclinical diagnostics or biotechsetting. • Proficiency in programming languages such asPython, C#, Java, or LabVIEW. • Experience integrating instruments usingserial, TCP/IP, or USB communication protocols, and parsingHL7 or ASTMdata formats. • Familiarity withlaboratory automation platformssuch as Tecan, Hamilton, Beckman Coulter, or Opentrons. • Solid understanding ofLIMS integrationand relational databases (e.g., PostgreSQL, MySQL, SQL Server). • Knowledge ofCLIA, CAP, and FDA regulatory requirementsin a clinical lab environment. Preferred Qualifications: • Experience withrobotics control systemsandmachine vision technologies. • Hands-on experience validating automated workflows in a CLIA-certified lab. • Familiarity with agile development practices, GxP compliance, and software lifecycle documentation. • Understanding of molecular diagnostic assays (e.g., qPCR, NGS, ELISA) and their automation. • Experience with containerization (Docker), version control (Git), and CI/CD pipelines. Work Environment: • Fast-paced, high-complexity CLIA/CAP-accredited laboratory environment. • Collaborative cross-functional teams including software, R&D, lab operations, and QA. • Opportunities to work with cutting-edge lab instrumentation and next-generation diagnostics platforms. • Hybrid on-site/remote flexibility depending on lab infrastructure and project needs. Job Type: Full-time Pay: $75,000.00 - $95,000.00 per year Benefits: • 401(k) • Health insurance • Paid time off • Vision insurance Work Location: In person