Jobs at Flagship Pioneering

Positions 43,513

Flagship Pioneering is a venture capital firm that builds companies from the ground up in biotech, health tech, and data‑driven science. Founded in 2014, the firm invests in early‑stage startups that translate scientific breakthroughs into market‑able products. With offices in Boston and San Francisco, Flagship partners with founders to provide capital, strategic guidance, and operational expertise.

Hiring at Flagship spans technical, scientific, and business disciplines. Current openings include Software Engineer – AI, Data Scientist – Genomics, Product Manager – Digital Health, Bioinformatics Analyst, Regulatory Affairs Specialist, and Sales & Marketing roles for emerging therapeutics. Candidates can expect rigorous interview processes that test domain knowledge, problem‑solving, and cultural fit within a fast‑moving, collaborative environment.

Job Transparency’s Flagship listings give applicants the edge by revealing exact salary ranges, bonus structures, and employee sentiment scores. Access to real‑time market data lets you benchmark offers against industry averages and negotiate confidently. The platform also aggregates interview feedback, helping you tailor your preparation and highlight the skills most valued by Flagship’s hiring teams.

Shipfitter Welder

Company: Global 1st Flagship

Location: Philadelphia, PA

Posted May 05, 2025

Create and design, from blueprints, sketches, templates, and written instructions. Proficient in manufacturing templates, laying out and fabricating structures…

VP, Computational Sciences

Company: Flagship Pioneering

Location: Boston, MA

Posted Oct 04, 2024

Ampersand Biomedicines is a biotechnology company seeking a dynamic leader for its Computational Platform. The company is committed to developing programmed biologics and has a strong emphasis on innovation.

HVAC Technician II

Company: Flagship Facility Services, Inc.

Location: Humble, TX

Posted Jul 09, 2025

Possess and maintain a valid driver’s license and good driving record with periodic checks. Assists in the repair and maintenance of a wide variety of pumps,…

Senior Scientist, Translational Catalysis

Company: Flagship Pioneering

Location: Cambridge

Posted Oct 06, 2024

Flagship Labs 97 Inc is a privately held early-stage technology company pioneering the application of artificial intelligence to transform every aspect of the scientific method. They are seeking individuals with an inclusive mindset and a diversity of thought to join their mission-driven team and contribute to the future of science.

Accounting Manager

Company: Flagship Pioneering

Location: Cambridge

Posted Oct 06, 2024

The text describes Flagship Pioneering's mission to create novel treatment options and build a world-class biopharmaceutical R&D capability. It also outlines the responsibilities of the Accounting Manager position, including financial reporting, budgeting, and compliance.

Janitorial Supervisor

Company: Flagship Facility Services, Inc.

Location: San Diego, CA

Posted Jun 10, 2025

Three to Five years related experience and/or training; or equivalent combination of education and experience, preferably in the janitorial/facilities field.

Flagship Pioneering Portfolio Company, Head of Finance

Company: Flagship Pioneering

Location: Cambridge

Posted Oct 06, 2024

Flagship Pioneering is a biotechnology company that invents and builds platform companies to change the world. They bring together scientific minds, entrepreneurial leaders, and capital to advance biotechnology and address humanity's most urgent challenges.

Janitor

Company: Flagship Facility Services, Inc.

Location: Los Angeles, CA

Posted Jul 01, 2025

*Sweeps, vacuums, mops, scrubs, waxes and polishes floors using industrial vacuum cleaners and scrubbing and buffing machines.*. *Clean glass on lobby door.*.

Senior Scientist, Translational

Company: Flagship Pioneering

Location: Cambridge

Posted Oct 03, 2024

Mirai Bio is a biotechnology company seeking a Translational Senior Research Scientist to develop nucleic acid medicines. The company is committed to transforming the approach to information molecule therapeutics and has a platform that integrates nanoparticle development with informatics technologies.

Automation Engineer II/III

Company: Flagship Pioneering

Location: Cambridge

Posted Oct 03, 2024

Mirai Bio is a biotechnology company seeking a highly talented individual to drive laboratory automation. The company is committed to transforming the approach to information molecule therapeutics and is seeking collaborative problem solvers to join their team.

Senior Research Associate/Associate Scientist, Pharmacology

Company: Flagship Pioneering

Location: Cambridge

Posted Oct 03, 2024

FL87 Inc is a biotechnology company developing a novel approach to gene therapy. They are searching for a Sr Research Associate to drive in vivo studies using their novel nucleic acid therapeutics platform.

Principal Scientist, Protein Sciences

Company: Flagship Pioneering

Location: Cambridge

Posted Oct 06, 2024

Flagship Labs 97 Inc is a privately held technology company pioneering the application of artificial intelligence to transform the scientific method. They are seeking a dedicated Principal Scientist Protein Sciences to join their team.

Frequently Asked Questions

What is it like to work at Flagship Pioneering?
<strong>Mission‑driven culture</strong> – employees tackle long‑term scientific challenges and enjoy ownership in the companies they help build. Teams cross‑function between biology, engineering, and business, fostering rapid iteration. Flagship offers flexible schedules, generous equity packages, and a focus on continuous learning through internal workshops and external conferences.
What types of positions are available at Flagship Pioneering?
Flagship hires across four main tracks: <em>Biotech & Life Sciences</em> (e.g., Bioinformatics Analyst, Regulatory Affairs Specialist), <em>Data & AI</em> (Software Engineer, Data Scientist), <em>Product & Operations</em> (Product Manager, Program Manager), and <em>Commercial & Strategy</em> (Sales, Marketing, Corporate Development). Each role emphasizes domain expertise, analytical rigor, and the ability to thrive in a startup environment.
How can I stand out as an applicant for Flagship Pioneering?
Align your portfolio with Flagship’s mission by highlighting projects that translate science into marketable solutions. Showcase quantitative impact (e.g., algorithm performance metrics, assay validation data). Build a concise résumé that maps your experience to the job description, and prepare for case interviews by practicing problem‑solving under time constraints. Leverage alumni networks, attend virtual company events, and submit a tailored cover letter that cites specific Flagship initiatives.

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