Jobs at Flagship Pioneering

Positions 43,513

Flagship Pioneering is a venture capital firm that builds companies from the ground up in biotech, health tech, and data‑driven science. Founded in 2014, the firm invests in early‑stage startups that translate scientific breakthroughs into market‑able products. With offices in Boston and San Francisco, Flagship partners with founders to provide capital, strategic guidance, and operational expertise.

Hiring at Flagship spans technical, scientific, and business disciplines. Current openings include Software Engineer – AI, Data Scientist – Genomics, Product Manager – Digital Health, Bioinformatics Analyst, Regulatory Affairs Specialist, and Sales & Marketing roles for emerging therapeutics. Candidates can expect rigorous interview processes that test domain knowledge, problem‑solving, and cultural fit within a fast‑moving, collaborative environment.

Job Transparency’s Flagship listings give applicants the edge by revealing exact salary ranges, bonus structures, and employee sentiment scores. Access to real‑time market data lets you benchmark offers against industry averages and negotiate confidently. The platform also aggregates interview feedback, helping you tailor your preparation and highlight the skills most valued by Flagship’s hiring teams.

Venture Associate (AIML, Comp Bio)

Company: Flagship Pioneering

Location: Cambridge

Posted Sep 17, 2024

Flagship Pioneering is a biotechnology company that invents and builds platform companies to transform human health or sustainability. They are seeking a Machine Learning Associate to contribute to the origination and operation of new companies.

Senior Computational Protein Engineer

Company: Flagship Pioneering

Location: Boston, MA

Posted Sep 12, 2024

Abiologics is a biotechnology company that uses artificial intelligence and chemistry to create new biologics. They are seeking exceptional scientists to drive innovation in biotechnology. The company was founded by Flagship Pioneerings venture creation engine and has originated and fostered the development of more than 100 scientific ventures.

Senior Scientist, Translational Catalysis

Company: Flagship Pioneering

Location: Cambridge

Posted Sep 10, 2024

Flagship Labs 97 Inc is a privately held early-stage technology company pioneering the application of artificial intelligence to transform every aspect of the scientific method. They are seeking individuals with an inclusive mindset and a diversity of thought to join their mission-driven team.

Executive Assistant

Company: Flagship Pioneering

Location: Cambridge

Posted Sep 11, 2024

Flagship Pioneering is a biotechnology company that invents and builds platform companies to change the world. They bring together scientific minds, entrepreneurial leaders, and capital to advance biotechnology and address humanity's most urgent challenges.

Principal Scientist, Protein Sciences

Company: Flagship Pioneering

Location: Cambridge

Posted Sep 10, 2024

Flagship Labs 97 Inc is a privately held technology company pioneering the application of artificial intelligence to transform the scientific method. They are seeking a dedicated Principal Scientist Protein Sciences to join their team.

Director/Senior Director, Synthesis

Company: Flagship Pioneering

Location: Cambridge

Posted Sep 13, 2024

Flagship Labs 97 Inc is a technology company pioneering the application of artificial intelligence to transform the scientific method. They are seeking a Director of Synthesis to join their team, responsible for leading a team of scientists and engineers, contributing to the ideation of new scientific campaigns, and establishing critical capabilities and workflows.

Director/Senior Director Talent Management Strategy

Company: Flagship Pioneering

Location: Cambridge

Posted Sep 16, 2024

Flagship Pioneering is a biotechnology company that invents and builds platform companies to change the world. They bring together scientific minds, entrepreneurial leaders, and capital to advance biotechnology and address humanity's most urgent challenges.

Pioneering Medicines: Scientist, Translational Sciences

Company: Flagship Pioneering

Location: Cambridge

Posted Sep 10, 2024

Flagship Pioneering is a biotech company that is building a world-class biopharmaceutical R&D capability to develop life-changing treatments for patients. They are looking for a research scientist to join their Translational Sciences team to deliver impactful biology data and shape the direction of drug discovery programs.

Principal Scientist, Innovation

Company: Flagship Pioneering

Location: Cambridge

Posted Sep 11, 2024

Flagship Pioneering is a biotechnology company that invents and builds platform companies to transform human health and sustainability. They are seeking a highly motivated and creative scientist to expand their DELVE platform, which is designed to unlock the therapeutic potential of the viral proteome.

Senior Scientist, Analytical Development

Company: Flagship Pioneering

Location: Cambridge

Posted Sep 14, 2024

The text describes Alltrna, a company that has developed a platform to decipher tRNA biology and pioneer tRNA therapeutics to treat thousands of diseases. The company is looking for a flexible analytical scientist to join their growing tRNA CMC Group.

Associate / Senior Associate, Pioneering Intelligence

Company: Flagship Pioneering

Location: Cambridge

Posted Sep 11, 2024

Flagship Pioneering is seeking a highly motivated and innovative individual to join their team as an AIML-focused or interdisciplinary Associate/Senior Associate. The role involves ideating and validating novel venture hypotheses, developing business cases and technical roadmaps, and co-leading new company origination. The company offers a dynamic and innovative work environment with opportunities for growth and learning.

Director, Employee Experience and Culture Enablement

Company: Flagship Pioneering

Location: Cambridge

Posted Sep 16, 2024

Flagship Pioneering is a biotechnology company that invents and builds platform companies to change the world. They bring together scientific minds, entrepreneurial leaders, and capital to advance biotechnology and address humanity's most urgent challenges.

Frequently Asked Questions

What is it like to work at Flagship Pioneering?
<strong>Mission‑driven culture</strong> – employees tackle long‑term scientific challenges and enjoy ownership in the companies they help build. Teams cross‑function between biology, engineering, and business, fostering rapid iteration. Flagship offers flexible schedules, generous equity packages, and a focus on continuous learning through internal workshops and external conferences.
What types of positions are available at Flagship Pioneering?
Flagship hires across four main tracks: <em>Biotech & Life Sciences</em> (e.g., Bioinformatics Analyst, Regulatory Affairs Specialist), <em>Data & AI</em> (Software Engineer, Data Scientist), <em>Product & Operations</em> (Product Manager, Program Manager), and <em>Commercial & Strategy</em> (Sales, Marketing, Corporate Development). Each role emphasizes domain expertise, analytical rigor, and the ability to thrive in a startup environment.
How can I stand out as an applicant for Flagship Pioneering?
Align your portfolio with Flagship’s mission by highlighting projects that translate science into marketable solutions. Showcase quantitative impact (e.g., algorithm performance metrics, assay validation data). Build a concise résumé that maps your experience to the job description, and prepare for case interviews by practicing problem‑solving under time constraints. Leverage alumni networks, attend virtual company events, and submit a tailored cover letter that cites specific Flagship initiatives.

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