Jobs at Flagship Pioneering

Positions 43,513

Flagship Pioneering is a venture capital firm that builds companies from the ground up in biotech, health tech, and data‑driven science. Founded in 2014, the firm invests in early‑stage startups that translate scientific breakthroughs into market‑able products. With offices in Boston and San Francisco, Flagship partners with founders to provide capital, strategic guidance, and operational expertise.

Hiring at Flagship spans technical, scientific, and business disciplines. Current openings include Software Engineer – AI, Data Scientist – Genomics, Product Manager – Digital Health, Bioinformatics Analyst, Regulatory Affairs Specialist, and Sales & Marketing roles for emerging therapeutics. Candidates can expect rigorous interview processes that test domain knowledge, problem‑solving, and cultural fit within a fast‑moving, collaborative environment.

Job Transparency’s Flagship listings give applicants the edge by revealing exact salary ranges, bonus structures, and employee sentiment scores. Access to real‑time market data lets you benchmark offers against industry averages and negotiate confidently. The platform also aggregates interview feedback, helping you tailor your preparation and highlight the skills most valued by Flagship’s hiring teams.

Scientist, Protein Analytics

Company: Flagship Pioneering

Location: Cambridge

Posted Aug 13, 2024

The text describes Flagship Pioneering, a biotechnology company that invents and builds platform companies to transform human health and sustainability. The company is seeking an experienced scientist to join their team to lead the design and execution of analytical evaluation of protein biologics.

FL97: VP/SVP, Life Sciences Strategy

Company: Flagship Pioneering

Location: Cambridge

Posted Aug 12, 2024

Flagship Labs 97 Inc is a privately held technology company pioneering the application of artificial intelligence to transform the scientific method. They are seeking a dedicated and skilled VPSVP Life Science Strategy to join their team.

Lead AI Scientist

Company: Flagship Pioneering

Location: Cambridge

Posted Aug 12, 2024

Flagship Pioneering is a bioplatform innovation company that invents and builds platform companies to transform human health and sustainability. They are seeking a Lead AI scientist to develop computational methods to identify new ways to treat human diseases.

Contracts Counsel

Company: Flagship Pioneering

Location: Cambridge

Posted Aug 22, 2024

Alltrna is a Flagship-founded company that aims to unlock tRNA biology and pioneer tRNA therapeutics to regulate the protein universe and resolve disease. The company is looking for a Contracts Counsel to assist with drafting, negotiating, and managing contracts related to its business needs.

Scientist/Sr. Scientist, Discovery Screening

Company: Flagship Pioneering

Location: Boston, MA

Posted Jul 06, 2024

Abiologics Inc is a biotechnology company seeking a cell biologist and assay developmentscreening scientist to develop and execute novel cell-based screening assays for their SynteinTM discovery platform.

Executive Assistant

Company: Flagship Pioneering

Location: Cambridge

Posted Aug 22, 2024

Flagship Pioneering is a biotech company that invents and builds platform companies to change the world. They bring together scientific minds, entrepreneurial leaders, and capital to advance biotechnology and address humanity's most urgent challenges.

Senior Scientist/Principal Scientist, Biomarker Discovery and Data Science

Company: Flagship Pioneering

Location: Cambridge

Posted Aug 13, 2024

Flagship Labs 84 Inc is a privately held early-stage company that is applying advanced biological and computational platforms to discover breakthroughs in detection of and intervention against the etiologies that drive progression from health to disease. The company is seeking a translational multiomics Sr Scientist/Principal Scientist to develop and apply bioinformatics computational biology and machine learning tools to generate insights and hypotheses from high-dimensional molecular datasets.

HR Manager

Company: Flagship Pioneering

Location: Cambridge

Posted Jul 07, 2024

Flagship Pioneering is seeking an HR Manager to provide day-to-day HR support to multiple startup companies, focusing on employee engagement, talent management, and organizational effectiveness. The ideal candidate has 3-5 years of HR experience, preferably in the biotech/pharma industry, and strong communication and interpersonal skills.

Principal, Pioneering Intelligence

Company: Flagship Pioneering

Location: Cambridge

Posted Aug 22, 2024

The text describes a job opening for a Principal at Flagship Pioneering, a biotechnology company that invents and builds platform companies. The company is seeking a highly motivated and innovative individual to join their team and guide the origination of new companies. The job requires a strong entrepreneurial drive, a clear understanding of operational aspects of AIML solutions, and a keen business and strategy acumen for AIML-driven value creation.

Histology R&D Lead

Company: Flagship Pioneering

Location: Cambridge

Posted Jul 10, 2024

Quotient Therapeutics is seeking an experienced biologist to lead the development of histology and tissue profiling capabilities. The ideal candidate will have a deep understanding of tissue and cell biology, experience with histology, immunohistochemistry, and FACS, and a proven ability to manage a high-performing team.

Legal Operations Manager

Company: Flagship Pioneering

Location: Cambridge

Posted Jun 05, 2024

Flagship Pioneering is a biotech company that invents and builds platform companies to revolutionize human health and sustainability. They unite life science innovation, company creation, and capital investment under one roof. Their companies have addressed urgent challenges like COVID-19 vaccination and curing intractable diseases. Flagship has been recognized for its positive social and environmental impact. The Legal Team Operations Manager role involves strategic process management, corporate governance, intercompany agreement coordination, compliance updates, team meeting planning, and more. The ideal candidate should have corporate operations management experience, strong project management skills, excellent interpersonal skills, and a proactive problem-solving approach.

Open Call

Company: Flagship Pioneering

Location: Boston, MA

Posted Jun 05, 2024

Abiologics, a biotech company founded by Flagship Pioneering, is seeking a motivated scientist with experience in peptide/protein engineering using non-canonical amino acids. The ideal candidate will contribute to building core platform technologies and discovering new medicines. Abiologics is known for its innovative work in biotechnology, with a mission to make biology better through chemistry. The company is part of Flagship Pioneering's ecosystem, which has originated and fostered more than 100 scientific ventures, resulting in over 500 patents and 50 clinical trials.

Frequently Asked Questions

What is it like to work at Flagship Pioneering?
<strong>Mission‑driven culture</strong> – employees tackle long‑term scientific challenges and enjoy ownership in the companies they help build. Teams cross‑function between biology, engineering, and business, fostering rapid iteration. Flagship offers flexible schedules, generous equity packages, and a focus on continuous learning through internal workshops and external conferences.
What types of positions are available at Flagship Pioneering?
Flagship hires across four main tracks: <em>Biotech & Life Sciences</em> (e.g., Bioinformatics Analyst, Regulatory Affairs Specialist), <em>Data & AI</em> (Software Engineer, Data Scientist), <em>Product & Operations</em> (Product Manager, Program Manager), and <em>Commercial & Strategy</em> (Sales, Marketing, Corporate Development). Each role emphasizes domain expertise, analytical rigor, and the ability to thrive in a startup environment.
How can I stand out as an applicant for Flagship Pioneering?
Align your portfolio with Flagship’s mission by highlighting projects that translate science into marketable solutions. Showcase quantitative impact (e.g., algorithm performance metrics, assay validation data). Build a concise résumé that maps your experience to the job description, and prepare for case interviews by practicing problem‑solving under time constraints. Leverage alumni networks, attend virtual company events, and submit a tailored cover letter that cites specific Flagship initiatives.

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